Stem cell niches determine stem cells fate and homeostasis.
Stem cell niches provide opportunities for organ regeneration.
Stem cell niches-functionalized strategies have been emerging.
| [1] | Yamanaka, S. (2020). Pluripotent stem cell-based cell therapy-promise and challenges. Cell Stem Cell 27: 523−531. DOI: 10.1016/j.stem.2020.09.014. |
| [2] | Watt, F.M., and Driskell, R.R. (2010). The therapeutic potential of stem cells. Philos. Trans. R. Soc. Lond. B Biol. Sci. 365: 155−163. DOI: 10.1098/rstb.2009.0149. |
| [3] | Daley, G.Q. (2012). The promise and perils of stem cell therapeutics. Cell Stem Cell 10: 740−749. DOI: 10.1016/j.stem.2012.05.010. |
| [4] | Galipeau, J., and Sensébé, L. (2018). Mesenchymal stromal cells: clinical challenges and therapeutic opportunities. Cell Stem Cell 22: 824−833. DOI: 10.1016/j.stem.2018.05.004. |
| [5] | Hofer, M., and Lutolf, M.P. (2021). Engineering organoids. Nat. Rev. Mater. 6: 402−420. DOI: 10.1038/s41578-021-00279-y. |
| [6] | Rossi, G., Manfrin, A., and Lutolf, M.P. (2018). Progress and potential in organoid research. Nat. Rev. Genet. 19: 671−687. DOI: 10.1038/s41576-018-0051-9. |
| [7] | Kim, W., Gwon, Y., Park, S., et al. (2023). Therapeutic strategies of three-dimensional stem cell spheroids and organoids for tissue repair and regeneration. Bioact. Mater. 19: 50−74. DOI: 10.1016/j.bioactmat.2022.03.039. |
| [8] | Lane, S.W., Williams, D.A., and Watt, F.M. (2014). Modulating the stem cell niche for tissue regeneration. Nat. Biotechnol. 32: 795−803. DOI: 10.1038/nbt.2978. |
| [9] | Chacón-Martínez, C.A., Koester, J., and Wickström, S.A. (2018). Signaling in the stem cell niche: regulating cell fate, function and plasticity. Development 145 : dev165399. DOI: 10.1242/dev.165399. |
| [10] | Hicks, M.R., and Pyle, A.D. (2023). The emergence of the stem cell niche. Trends Cell Biol. 33: 112−123. DOI: 10.1016/j.tcb.2022.07.003. |
| [11] | Xie, T., and Spradling, A.C. (2000). A niche maintaining germ line stem cells in the Drosophila ovary. Science 290: 328−330. DOI: 10.1126/science.290.5490.328. |
| [12] | Morrison, S.J., and Spradling, A.C. (2008). Stem cells and niches: mechanisms that promote stem cell maintenance throughout life. Cell 132: 598−611. DOI: 10.1016/j.cell.2008.01.038. |
| [13] | Schmidt, M., Schüler, S.C., Hüttner, S.S., et al. (2019). Adult stem cells at work: regenerating skeletal muscle. Cell. Mol. Life Sci. 76: 2559−2570. DOI: 10.1007/s00018-019-03093-6. |
| [14] | Brittan, M., and Wright, N.A. (2002). Gastrointestinal stem cells. J. Pathol. 197: 492−509. DOI: 10.1002/path.1155. |
| [15] | Shaker, A., and Rubin, D.C. (2010). Intestinal stem cells and epithelial-mesenchymal interactions in the crypt and stem cell niche. Transl. Res. 156: 180−187. DOI: 10.1016/j.trsl.2010.06.003. |
| [16] | Zhang, L., Theise, N., Chua, M., et al. (2008). The stem cell niche of human livers: Symmetry between development and regeneration. Hepatology 48: 1598−1607. DOI: 10.1002/hep.22516. |
| [17] | Gonzales, K.A.U., and Fuchs, E. (2017). Skin and its regenerative powers: An alliance between stem cells and their niche. Dev. Cell 43: 387−401. DOI: 10.1016/j.devcel.2017.10.001. |
| [18] | Ort, C., Dayekh, K., Xing, M., et al. (2018). Emerging strategies for stem cell lineage commitment in tissue engineering and regenerative medicine. ACS Biomater. Sci. Eng. 4: 3644−3657. DOI: 10.1021/acsbiomaterials.8b00532. |
| [19] | Wattrus, S.J., and Zon, L.I. (2018). Stem cell safe harbor: The hematopoietic stem cell niche in zebrafish. Blood Adv. 2: 3063−3069. DOI: 10.1182/bloodadvances.2018021725. |
| [20] | Diotel, N., Lübke, L., Strähle, U., et al. (2020). Common and distinct features of adult neurogenesis and regeneration in the telencephalon of zebrafish and mammals. Front. Neurosci. 14: 568930. DOI: 10.3389/fnins.2020.568930. |
| [21] | Schwarzer, S., Rekhade, D.R., Machate, A., et al. (2022). Reactivation of the neurogenic niche in the adult zebrafish statoacoustic ganglion following a mechanical lesion. Front. Cell Dev. Biol. 10: 850624. DOI: 10.3389/fcell.2022.850624. |
| [22] | Rajan, V., Melong, N., Hing Wong, W., et al. (2020). Humanized zebrafish enhance human hematopoietic stem cell survival and promote acute myeloid leukemia clonal diversity. Haematologica 105: 2391−2399. DOI: 10.3324/haematol.2019.223040. |
| [23] | Ishizuya-Oka, A., and Hasebe, T. (2013). Establishment of intestinal stem cell niche during amphibian metamorphosis. Curr. Top. Dev. Biol. 103: 305−327. DOI: 10.1016/B978-0-12-385979-2.00011-3. |
| [24] | Ghaddar, B., Lübke, L., Couret, D., et al. (2021). Cellular mechanisms participating in brain repair of adult zebrafish and mammals after injury. Cell 10 : 391. DOI: 10.3390/cells10020391. |
| [25] | Ceci, M., Mariano, V., and Romano, N. (2018). Zebrafish as a translational regeneration model to study the activation of neural stem cells and role of their environment. Rev. Neurosci. 30: 45−66. DOI: 10.1515/revneuro-2018-0020. |
| [26] | Xia, J., Kang, Z., Xue, Y., et al. (2021). A single-cell resolution developmental atlas of hematopoietic stem and progenitor cell expansion in zebrafish. Proc. Natl. Acad. Sci. U. S. A. 118 : e2015748118. DOI: 10.1073/pnas.2015748118. |
| [27] | Hu, H., Duan, Y., Wang, K., et al. (2022). Dental niche cells directly contribute to tooth reconstitution and morphogenesis. Cell Rep. 41: 111737. DOI: 10.1016/j.celrep.2022.111737. |
| [28] | Santos, A.J.M., Lo, Y.H., Mah, A.T., et al. (2018). The intestinal stem cell niche: Homeostasis and adaptations. Trends Cell Biol. 28: 1062−1078. DOI: 10.1016/j.tcb.2018.08.001. |
| [29] | Ratnayake, D., Nguyen, P.D., Rossello, F.J., et al. (2021). Macrophages provide a transient muscle stem cell niche via NAMPT secretion. Nature 591: 281−287. DOI: 10.1038/s41586-021-03199-7. |
| [30] | Li, J., Tan, J., Martino, M.M., et al. (2018). Regulatory T-cells: Potential regulator of tissue repair and regeneration. Front. Immunol. 9: 585. DOI: 10.3389/fimmu.2018.00585. |
| [31] | Schüler, S.C., Liu, Y., Dumontier, S., et al. (2022). Extracellular matrix: Brick and mortar in the skeletal muscle stem cell niche. Front. Cell Dev. Biol. 10: 1056523. DOI: 10.3389/fcell.2022.1056523. |
| [32] | Lee-Thedieck, C., Schertl, P., and Klein, G. (2022). The extracellular matrix of hematopoietic stem cell niches. Adv. Drug Deliv. Rev. 181: 114069. DOI: 10.1016/j.addr.2021.114069. |
| [33] | Arulmoli, J., Pathak, M.M., McDonnell, L.P., et al. (2015). Static stretch affects neural stem cell differentiation in an extracellular matrix-dependent manner. Sci. Rep. 5: 8499. DOI: 10.1038/srep08499. |
| [34] | Sun, Y., Xu, S., Jiang, M., et al. (2021). Role of the extracellular matrix in Alzheimer’s disease. Front. Aging Neurosci. 13: 707466. DOI: 10.3389/fnagi.2021.707466. |
| [35] | Arranz, A.M., Perkins, K.L., Irie, F., et al. (2014). Hyaluronan deficiency due to Has3 knock-out causes altered neuronal activity and seizures via reduction in brain extracellular space. J. Neurosci. 34: 6164−6176. DOI: 10.1523/JNEUROSCI.3458-13.2014. |
| [36] | Yeo, G.C., and Weiss, A.S. (2019). Soluble matrix protein is a potent modulator of mesenchymal stem cell performance. Proc. Natl. Acad. Sci. U. S. A. 116: 2042−2051. DOI: 10.1073/pnas.1812951116. |
| [37] | Saw, S., Weiss, A., Khokha, R., et al. (2019). Metalloproteases: On the watch in the hematopoietic niche. Trends Immunol. 40: 1053−1070. DOI: 10.1016/j.it.2019.09.006. |
| [38] | Martín-Alonso, M., Iqbal, S., Vornewald, P.M., et al. (2021). Smooth muscle-specific MMP17 (MT4-MMP) regulates the intestinal stem cell niche and regeneration after damage. Nat. Commun. 12: 6741. DOI: 10.1038/s41467-021-26904-6. |
| [39] | Nusse, R., and Clevers, H. (2017). Wnt/beta-catenin signaling, disease, and emerging therapeutic modalities. Cell 169: 985−999. DOI: 10.1016/j.cell.2017.05.016. |
| [40] | Chakrabarti, R., Celià-Terrassa, T., Kumar, S., et al. (2018). Notch ligand Dll1 mediates cross-talk between mammary stem cells and the macrophageal niche. Science 360 : eaan4153. DOI: 10.1126/science.aan4153. |
| [41] | Chung, M.I., Bujnis, M., Barkauskas, C.E., et al. (2018). Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation. Development 145 : dev163014. DOI: 10.1242/dev.163014. |
| [42] | Chen, G., Xu, H., Yao, Y., et al. (2020). BMP signaling in the development and regeneration of cranium bones and maintenance of calvarial stem cells. Front. Cell Dev. Biol. 8: 135. DOI: 10.3389/fcell.2020.00135. |
| [43] | Wang, Y., Kim, R., Hinman, S.S., et al. (2018). Bioengineered systems and designer matrices that recapitulate the intestinal stem cell niche. Cell. Mol. Gastroenterol. Hepatol. 5: 440−453.e441. DOI: 10.1016/j.jcmgh.2018.01.008. |
| [44] | Parfenova, O.K., Kukes, V.G., and Grishin, D.V. (2021). Follistatin-like proteins: Structure, functions and biomedical importance. Biomedicines 9 : 999. DOI: 10.3390/biomedicines9080999. |
| [45] | Nakamura, T., Jimenez-Rojo, L., Koyama, E., et al. (2017). Epiprofin regulates enamel formation and tooth morphogenesis by controlling epithelial-mesenchymal interactions during tooth development. J. Bone Miner. Res. 32: 601−610. DOI: 10.1002/jbmr.3024. |
| [46] | Fahmy-Garcia, S., Farrell, E., Witte-Bouma, J., et al. (2019). Follistatin effects in migration, vascularization, and osteogenesis in vitro and bone repair in vivo. Front. Bioeng. Biotechnol. 7: 38. DOI: 10.3389/fbioe.2019.00038. |
| [47] | Elbediwy, A., Vincent-Mistiaen, Z.I., and Thompson, B.J. (2016). YAP and TAZ in epithelial stem cells: A sensor for cell polarity, mechanical forces and tissue damage. Bioessays 38: 644−653. DOI: 10.1002/bies.201600037. |
| [48] | van Soldt, B.J., and Cardoso, W.V. (2019). Hippo-Yap/Taz signaling: Complex network interactions and impact in epithelial cell behavior. Wiley Interdiscip. Rev. Dev. Biol. 9: e371. DOI: 10.1002/wdev.371. |
| [49] | Piccolo, S., Dupont, S., and Cordenonsi, M. (2014). The biology of YAP/TAZ: Hippo signaling and beyond. Physiol. Rev. 94: 1287−1312. DOI: 10.1152/physrev.00005.2014. |
| [50] | Moya, I.M., and Halder, G. (2019). Hippo-YAP/TAZ signalling in organ regeneration and regenerative medicine. Nat. Rev. Mol. Cell Biol. 20: 211−226. DOI: 10.1038/s41580-018-0086-y. |
| [51] | Park, H.W., Kim, Y.C., Yu, B., et al. (2015). Alternative Wnt signaling activates YAP/TAZ. Cell 162: 780−794. DOI: 10.1016/j.cell.2015.07.013. |
| [52] | Adebayo, A.K., and Nakshatri, H. (2022). Modeling preclinical cancer studies under physioxia to enhance clinical translation. Cancer Res. 82: 4313−4321. DOI: 10.1158/0008-5472.CAN-22-2311. |
| [53] | Li, C., Wu, B., Li, Y., et al. (2022). Loss of sphingosine kinase 2 promotes the expansion of hematopoietic stem cells by improving their metabolic fitness. Blood 140: 1686−1701. DOI: 10.1182/blood.2022016112. |
| [54] | Liu, J., He, J., Ge, L., et al. (2021). Hypoxic preconditioning rejuvenates mesenchymal stem cells and enhances neuroprotection following intracerebral hemorrhage via the miR-326-mediated autophagy. Stem Cell. Res. Ther. 12: 413. DOI: 10.1186/s13287-021-02480-w. |
| [55] | Mu, J., Li, L., Wu, J., et al. (2022). Hypoxia-stimulated mesenchymal stem cell-derived exosomes loaded by adhesive hydrogel for effective angiogenic treatment of spinal cord injury. Biomater Sci 10: 1803−1811. DOI: 10.1039/D1BM01722E. |
| [56] | Hu, C., Fan, L., Cen, P., et al. (2016). Energy metabolism plays a critical role in stem cell maintenance and differentiation. Int. J. Mol. Sci. 17: 253. DOI: 10.3390/ijms17020253. |
| [57] | Folmes, C.D., Dzeja, P.P., Nelson, T.J., et al. (2012). Metabolic plasticity in stem cell homeostasis and differentiation. Cell Stem Cell 11: 596−606. DOI: 10.1016/j.stem.2012.10.002. |
| [58] | Morimoto, H., Yamamoto, T., Miyazaki, T., et al. (2021). An interplay of NOX1-derived ROS and oxygen determines the spermatogonial stem cell self-renewal efficiency under hypoxia. Genes Dev. 35: 250−260. DOI: 10.1101/gad.339903.120. |
| [59] | He, R., Wang, Z., Cui, M., et al. (2021). HIF1A Alleviates compression-induced apoptosis of nucleus pulposus derived stem cells via upregulating autophagy. Autophagy 17: 3338−3360. DOI: 10.1080/15548627.2021.1872227. |
| [60] | Choi, W., Kwon, S.J., Jin, H.J., et al. (2017). Optimization of culture conditions for rapid clinical-scale expansion of human umbilical cord blood-derived mesenchymal stem cells. Clin. Transl. Med. 6: 38. DOI: 10.1186/s40169-017-0168-z. |
| [61] | Nakamura, N., Shi, X., Darabi, R., et al. (2021). Hypoxia in cell reprogramming and the epigenetic regulations. Front. Cell Dev. Biol. 9: 609984. DOI: 10.3389/fcell.2021.609984. |
| [62] | Wang, W., Hu, C.K., Zeng, A., et al. (2020). Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates. Science 369 : eaaz3090. DOI: 10.1126/science.aaz3090. |
| [63] | Lumelsky, N., O'Hayre, M., Chander, P., et al. (2018). Autotherapies: Enhancing endogenous healing and regeneration. Trends Mol. Med. 24: 919−930. DOI: 10.1016/j.molmed.2018.08.004. |
| [64] | Dong, J., Hu, Y., Fan, X., et al. (2018). Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis. Genome Biol. 19: 31. DOI: 10.1186/s13059-018-1416-2. |
| [65] | Ribatti, D., and Santoiemma, M. (2014). Epithelial-mesenchymal interactions: A fundamental Developmental Biology mechanism. Int. J. Dev. Biol. 58: 303−306. DOI: 10.1387/ijdb.140143dr. |
| [66] | Nakao, K., Morita, R., Saji, Y., et al. (2007). The development of a bioengineered organ germ method. Nat. Methods 4: 227−230. DOI: 10.1038/nmeth1012. |
| [67] | Wang, Z., Kapadia, W., Li, C., et al. (2021). Tissue-specific engineering: 3D bioprinting in regenerative medicine. J. Control. Release 329: 237−256. DOI: 10.1016/j.jconrel.2020.11.044. |
| [68] | Stevens, A.J., Harris, A.R., Gerdts, J., et al. (2023). Programming multicellular assembly with synthetic cell adhesion molecules. Nature 614: 144−152. DOI: 10.1038/s41586-022-05622-z. |
| [69] | Song, J.J., and Ott, H.C. (2011). Organ engineering based on decellularized matrix scaffolds. Trends Mol. Med. 17: 424−432. DOI: 10.1016/j.molmed.2011.03.005. |
| [70] | Rajab, T.K., O'Malley, T.J., and Tchantchaleishvili, V. (2020). Decellularized scaffolds for tissue engineering: Current status and future perspective. Artif. Organs 44: 1031−1043. DOI: 10.1111/aor.13701. |
| [71] | Orlando, G., Booth, C., Wang, Z., et al. (2013). Discarded human kidneys as a source of ECM scaffold for kidney regeneration technologies. Biomaterials 34: 5915−5925. DOI: 10.1016/j.biomaterials.2013.04.033. |
| [72] | Nichols, J.E., Niles, J., Riddle, M., et al. (2013). Production and assessment of decellularized pig and human lung scaffolds. Tissue Eng. Part A 19: 2045−2062. DOI: 10.1089/ten.tea.2012.0250. |
| [73] | Sánchez, P.L., Fernández-Santos, M.E., Costanza, S., et al. (2015). Acellular human heart matrix: A critical step toward whole heart grafts. Biomaterials 61: 279−289. DOI: 10.1016/j.biomaterials.2015.04.056. |
| [74] | Mazza, G., Rombouts, K., Rennie Hall, A., et al. (2015). Decellularized human liver as a natural 3D-scaffold for liver bioengineering and transplantation. Sci. Rep. 5: 13079. DOI: 10.1038/srep13079. |
| [75] | Zhang, W., Vazquez, B., Oreadi, D., et al. (2017). Decellularized tooth bud scaffolds for tooth regeneration. J. Dent. Res. 96: 516−523. DOI: 10.1177/0022034516689082. |
| [76] | Choudhury, D., Tun, H.W., Wang, T., et al. (2018). Organ-derived decellularized extracellular matrix: A game changer for bioink manufacturing. Trends Biotechnol. 36: 787−805. DOI: 10.1016/j.tibtech.2018.03.003. |
| [77] | Xing, H., Lee, H., Luo, L., et al. (2020). Extracellular matrix-derived biomaterials in engineering cell function. Biotechnol. Adv. 42: 107421. DOI: 10.1016/j.biotechadv.2019.107421. |
| [78] | Xing, Y., and Naik, S. (2020). Under pressure: Stem cell-niche interactions coordinate tissue adaptation to inflammation. Curr. Opin. Cell Biol. 67: 64−70. DOI: 10.1016/j.ceb.2020.08.009. |
| [79] | Chaudhuri, O., Cooper-White, J., Janmey, P.A., et al. (2020). Effects of extracellular matrix viscoelasticity on cellular behaviour. Nature 584: 535−546. DOI: 10.1038/s41586-020-2612-2. |
| [80] | Xie, W., Wei, X., Kang, H., et al. (2023). Static and dynamic: Evolving biomaterial mechanical properties to control cellular mechanotransduction. Adv. Sci. 10: e2204594. DOI: 10.1002/advs.202204594. |
| [81] | Ikeda, E., Morita, R., Nakao, K., et al. (2009). Fully functional bioengineered tooth replacement as an organ replacement therapy. Proc. Natl. Acad. Sci. U. S. A. 106: 13475−13480. DOI: 10.1073/pnas.0902944106. |
| [82] | Zhang, W., and Yelick, P.C. (2021). Tooth repair and regeneration: potential of dental stem cells. Trends Mol. Med. 27: 501−511. DOI: 10.1016/j.molmed.2021.02.005. |
| [83] | Wang, F., Xiao, J., Cong, W., et al. (2014). Morphology and chronology of diphyodont dentition in miniature pigs, Sus Scrofa. Oral Dis. 20: 367−379. DOI: 10.1111/odi.12126. |
| [84] | Li, Y., Li, G., Wang, F., et al. (2019). Integrated analysis of LncRNA-mRNA coexpression in the extracellular matrix of developing deciduous teeth in miniature pigs. Biomed. Res. Int. 2019: 6159490. DOI: 10.1155/2019/6159490. |
| [85] | Li, Y., Gong, Y., Wu, X., et al. (2018). Quantitative proteomic analysis of deciduous molars during cap to bell transition in miniature pig. J. Proteomics 172: 57−67. DOI: 10.1016/j.jprot.2017.10.013. |
| [86] | Wang, F., Li, Y., Wu, X., et al. (2017). Transcriptome analysis of coding and long non-coding RNAs highlights the regulatory network of cascade initiation of permanent molars in miniature pigs. BMC Genomics 18: 148. DOI: 10.1186/s12864-017-3546-4. |
| [87] | Li, Y., Wang, X., Ren, J., et al. (2018). Mandible exosomal ssc-mir-133b regulates tooth development in miniature swine via endogenous apoptosis. Bone Res. 6: 28. DOI: 10.1038/s41413-018-0028-5. |
| [88] | Wu, X., Hu, J., Li, G., et al. (2020). Biomechanical stress regulates mammalian tooth replacement via the integrin β1-RUNX2-Wnt pathway. EMBO J. 39: e102374. DOI: 10.15252/embj.2019102374. |
| [89] | Wang, F., Wu, Z., Fan, Z., et al. (2018). The cell re-association-based whole-tooth regeneration strategies in large animal, Sus scrofa. Cell Prolif. 51: e12479. DOI: 10.1111/cpr.12479. |
| [90] | Wu, Z., Wang, F., Fan, Z., et al. (2019). Whole-tooth regeneration by allogeneic cell reassociation in pig jawbone. Tissue Eng. Part A 25: 1202−1212. DOI: 10.1089/ten.tea.2018.0243. |
| [91] | Gao, Z.H., Hu, L., Liu, G.L., et al. (2016). Bio-root and implant-based restoration as a tooth replacement alternative. J. Dent. Res. 95: 642−649. DOI: 10.1177/0022034516639260. |
| [92] | Sonoyama, W., Liu, Y., Fang, D., et al. (2006). Mesenchymal stem cell-mediated functional tooth regeneration in swine. PLoS ONE 1: e79. DOI: 10.1371/journal.pone.0000079. |
| [93] | Wei, F., Song, T., Ding, G., et al. (2013). Functional tooth restoration by allogeneic mesenchymal stem cell-based bio-root regeneration in swine. Stem Cells Dev. 22: 1752−1762. DOI: 10.1089/scd.2012.0688. |
| [94] | He, L., Zhou, J., Chen, M., et al. (2019). Parenchymal and stromal tissue regeneration of tooth organ by pivotal signals reinstated in decellularized matrix. Nat. Mater. 18: 627−637. DOI: 10.1038/s41563-019-0368-6. |
| [95] | Yang, X., Ma, Y., Guo, W., et al. (2019). Stem cells from human exfoliated deciduous teeth as an alternative cell source in bio-root regeneration. Theranostics 9: 2694−2711. DOI: 10.7150/thno.31801. |
| [96] | Sui, B.D., Zheng, C.X., Zhao, W.M., et al. (2023). Mesenchymal condensation in tooth development and regeneration: A focus on translational aspects of organogenesis. Physiol. Rev. 103: 1899−1964. DOI: 10.1152/physrev.00019.2022. |
| [97] | Yen, T.H., and Wright, N.A. (2006). The gastrointestinal tract stem cell niche. Stem Cell Rev. 2: 203−212. DOI: 10.1007/s12015-006-0048-1. |
| [98] | Tullie, L., Jones, B.C., De Coppi, P., et al. (2022). Building gut from scratch - progress and update of intestinal tissue engineering. Nat. Rev. Gastroenterol. Hepatol. 19: 417−431. DOI: 10.1038/s41575-022-00586-x. |
| [99] | Raghavan, S., Gilmont, R.R., Miyasaka, E.A., et al. (2011). Successful implantation of bioengineered, intrinsically innervated, human internal anal sphincter. Gastroenterology 141: 310−319. DOI: 10.1053/j.gastro.2011.03.056. |
| [100] | Speer, A.L., Ren, X., McNeill, E.P., et al. (2021). Bioengineering of the digestive tract: Approaching the clinic. Cytotherapy 23: 381−389. DOI: 10.1016/j.jcyt.2021.02.006. |
| [101] | Orlando, G., Domínguez-Bendala, J., Shupe, T., et al. (2013). Cell and organ bioengineering technology as applied to gastrointestinal diseases. Gut 62: 774−786. DOI: 10.1136/gutjnl-2011-301111. |
| [102] | Pentinmikko, N., Iqbal, S., Mana, M., et al. (2019). Notum produced by Paneth cells attenuates regeneration of aged intestinal epithelium. Nature 571: 398−402. DOI: 10.1038/s41586-019-1383-0. |
| [103] | Fan, Y., Huo, X., Guo, B., et al. (2022). Cullin 4b-RING ubiquitin ligase targets IRGM1 to regulate Wnt signaling and intestinal homeostasis. Cell Death Differ. 29: 1673−1688. DOI: 10.1038/s41418-022-00954-9. |
| [104] | Richmond, C.A., Rickner, H., Shah, M.S., et al. (2018). JAK/STAT-1 signaling is required for reserve intestinal stem cell activation during intestinal regeneration following acute inflammation. Stem Cell Rep. 10: 17−26. DOI: 10.1016/j.stemcr.2017.11.015. |
| [105] | Zheng, Y., Song, Y., Han, Q., et al. (2018). Intestinal epithelial cell-specific IGF1 promotes the expansion of intestinal stem cells during epithelial regeneration and functions on the intestinal immune homeostasis. Am. J. Physiol. Endocrinol. Metab. 315: E638−E649. DOI: 10.1152/ajpendo.00022.2018. |
| [106] | Campana, L., Esser, H., Huch, M., et al. (2021). Liver regeneration and inflammation: From fundamental science to clinical applications. Nat. Rev. Mol. Cell Biol. 22: 608−624. DOI: 10.1038/s41580-021-00373-7. |
| [107] | Zhang, L., Ma, X.J., Fei, Y.Y., et al. (2022). Stem cell therapy in liver regeneration: Focus on mesenchymal stem cells and induced pluripotent stem cells. Pharmacol. Ther. 232: 108004. DOI: 10.1016/j.pharmthera.2021.108004. |
| [108] | Stevens, K.R., Scull, M.A., Ramanan, V., et al. (2017). In situ expansion of engineered human liver tissue in a mouse model of chronic liver disease. Sci. Transl. Med. 9 : eaah5505. DOI: 10.1126/scitranslmed.aah5505. |
| [109] | Asadi, M., Khalili, M., Lotfi, H., et al. (2021). Liver bioengineering: Recent trends/advances in decellularization and cell sheet technologies towards translation into the clinic. Life Sci. 276: 119373. DOI: 10.1016/j.lfs.2021.119373. |
| [110] | Alwahsh, S.M., Rashidi, H., and Hay, D.C. (2018). Liver cell therapy: is this the end of the beginning. Cell. Mol. Life Sci. 75: 1307−1324. DOI: 10.1007/s00018-017-2713-8. |
| [111] | Tatsumi, K., and Okano, T. (2017). Hepatocyte transplantation: Cell sheet technology for liver cell transplantation. Curr. Trans. Rep. 4: 184−192. DOI: 10.1007/s40472-017-0156-7. |
| [112] | Fujii, M., Yamanouchi, K., Sakai, Y., et al. (2018). In vivo construction of liver tissue by implantation of a hepatic non-parenchymal/adipose-derived stem cell sheet. J. Tissue Eng. Regen. Med. 12: e287−e295. DOI: 10.1002/term.2424. |
| [113] | Tang, X.Y., Wu, S., Wang, D., et al. (2022). Human organoids in basic research and clinical applications. Signal Transduct. Target. Ther. 7: 168. DOI: 10.1038/s41392-022-01024-9. |
| [114] | Miao, Y., Ha, A., de Lau, W., et al. (2020). Next-generation surrogate Wnts support organoid growth and deconvolute frizzled pleiotropy in vivo. Cell Stem Cell 27: 840−851.e846. DOI: 10.1016/j.stem.2020.07.020. |
| [115] | Nguyen, D.T., Althage, M., Magnone, M.C., et al. (2018). Translational strategy: Humanized mini-organs. Drug Discov. Today 23: 1812−1817. DOI: 10.1016/j.drudis.2018.05.039. |
| [116] | Mullard, A. (2023). Mini-organs attract big pharma. Nat. Rev. Drug Discov. 22: 175−176. DOI: 10.1038/d41573-023-00030-y. |
| [117] | Corrò, C., Novellasdemunt, L., and Li, V.S.W. (2020). A brief history of organoids. Am. J. Physiol. Cell Physiol. 319: C151−c165. DOI: 10.1152/ajpcell.00120.2020. |
| [118] | Madl, C.M., and Heilshorn, S.C. (2018). Engineering hydrogel microenvironments to recapitulate the stem cell niche. Annu. Rev. Biomed. Eng. 20: 21−47. DOI: 10.1146/annurev-bioeng-062117-120954. |
| [119] | Yan, K.S., Janda, C.Y., Chang, J., et al. (2017). Non-equivalence of Wnt and R-spondin ligands during Lgr5(+) intestinal stem-cell self-renewal. Nature 545: 238−242. DOI: 10.1038/nature22313. |
| [120] | Puschhof, J., Pleguezuelos-Manzano, C., Martinez-Silgado, A., et al. (2021). Intestinal organoid cocultures with microbes. Nat. Protoc. 16: 4633−4649. DOI: 10.1038/s41596-021-00589-z. |
| [121] | Han, X., Mslati, M.A., Davies, E., et al. (2021). Creating a more perfect union: modeling intestinal bacteria-epithelial interactions using organoids. Cell. Mol. Gastroenterol. Hepatol. 12: 769−782. DOI: 10.1016/j.jcmgh.2021.04.010. |
| [122] | Tallapragada, N.P., Cambra, H.M., Wald, T., et al. (2021). Inflation-collapse dynamics drive patterning and morphogenesis in intestinal organoids. Cell Stem Cell 28: 1516−1532.e1514. DOI: 10.1016/j.stem.2021.04.002. |
| [123] | Meng, F., Shen, C., Yang, L., et al. (2022). Mechanical stretching boosts expansion and regeneration of intestinal organoids through fueling stem cell self-renewal. Cell Regen. 11: 39. DOI: 10.1186/s13619-022-00137-4. |
| [124] | Zhang, W., Huang, G., and Xu, F. (2020). Engineering biomaterials and approaches for mechanical stretching of cells in three dimensions. Front. Bioeng. Biotechnol. 8: 589590. DOI: 10.3389/fbioe.2020.589590. |
| [125] | He, L., Si, G., Huang, J., et al. (2018). Mechanical regulation of stem-cell differentiation by the stretch-activated Piezo channel. Nature 555: 103−106. DOI: 10.1038/nature25744. |
| [126] | Argentiere, S., Siciliano, P.A., and Blasi, L. (2021). How microgels can improve the impact of organ-on-chip and microfluidic devices for 3d culture: Compartmentalization, single cell encapsulation and control on cell fate. Polymers 13 : 3216. DOI: 10.3390/polym13193216. |
| [127] | Rivera, K.R., Pozdin, V.A., Young, A.T., et al. (2019). Integrated phosphorescence-based photonic biosensor (iPOB) for monitoring oxygen levels in 3D cell culture systems. Biosens. Bioelectron. 123: 131−140. DOI: 10.1016/j.bios.2018.07.035. |
| [128] | Park, S.E., Georgescu, A., and Huh, D. (2019). Organoids-on-a-chip. Science 364: 960−965. DOI: 10.1126/science.aaw7894. |
| [129] | Zhang, S., Wan, Z., and Kamm, R.D. (2021). Vascularized organoids on a chip: Strategies for engineering organoids with functional vasculature. Lab Chip 21: 473−488. DOI: 10.1039/D0LC01186J. |
| [130] | Shirure, V.S., Hughes, C.C.W., and George, S.C. (2021). Engineering vascularized organoid-on-a-chip models. Annu. Rev. Biomed. Eng. 23: 141−167. DOI: 10.1146/annurev-bioeng-090120-094330. |
| [131] | Not list. (2022). Organoids and organs on a chip. Nat. Biotechnol. 40: 472. DOI: 10.1038/s41587-022-01287-1. |
| [132] | Baptista, L.S., Porrini, C., Kronemberger, G.S., et al. (2022). 3D organ-on-a-chip: The convergence of microphysiological systems and organoids. Front. Cell Dev. Biol. 10: 1043117. DOI: 10.3389/fcell.2022.1043117. |
| [133] | Wang, Y., Gao, Y., Pan, Y., et al. (2023). Emerging trends in organ-on-a-chip systems for drug screening. Acta Pharm. Sin. B 13: 2483−2509. DOI: 10.1016/j.apsb.2023.02.006. |
| [134] | Skardal, A., Aleman, J., Forsythe, S., et al. (2020). Drug compound screening in single and integrated multi-organoid body-on-a-chip systems. Biofabrication 12: 025017. DOI: 10.1088/1758-5090/ab6d36. |
| [135] | Mittal, R., Woo, F.W., Castro, C.S., et al. (2019). Organ-on-chip models: Implications in drug discovery and clinical applications. J. Cell. Physiol. 234: 8352−8380. DOI: 10.1002/jcp.27729. |
| [136] | Rajan, S.A.P., Aleman, J., Wan, M., et al. (2020). Probing prodrug metabolism and reciprocal toxicity with an integrated and humanized multi-tissue organ-on-a-chip platform. Acta Biomater. 106: 124−135. DOI: 10.1016/j.actbio.2020.02.015. |
| [137] | Ouchi, R., and Koike, H. (2023). Modeling human liver organ development and diseases with pluripotent stem cell-derived organoids. Front. Cell Dev. Biol. 11: 1133534. DOI: 10.3389/fcell.2023.1133534. |
| [138] | Maldonado, M., Luu, R.J., Ico, G., et al. (2017). Lineage- and developmental stage-specific mechanomodulation of induced pluripotent stem cell differentiation. Stem Cell. Res. Ther. 8: 216. DOI: 10.1186/s13287-017-0667-2. |
| [139] | Mashinchian, O., De Franceschi, F., Nassiri, S., et al. (2022). An engineered multicellular stem cell niche for the 3D derivation of human myogenic progenitors from iPSCs. EMBO J. 41: e110655. DOI: 10.15252/embj.2022110655. |
| Liu H, Hu L, Zhang D, et al., (2023). Stem cell niches functionalized strategies for organ regeneration and manufacturing. The Innovation Medicine 1(3), 100037. https://doi.org/10.59717/j.xinn-med.2023.100037 |
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Composition of stem cell niches.
Function of stem cell niches.
Stem cell niche-functionalized strategies for gastrointestinal tract, tooth and liver regeneration.
Development of regenerative medicine based on stem cell niche.
Application of organoids-on-chips in regeneration.